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NCBI NOW: Next Generation Sequencing Online Workshop

Majewski K. NCBI NOW: Next Generation Sequencing Online Workshop. NLM Tech Bull. 2015 Sep-Oct;(406):e1.

October 05, 2015 [posted]

From October 13 to October 23, NCBI will present the first iteration of NCBI NOW, a free online experience aimed at those new to next generation sequencing (NGS) analysis. Enrollment in this course is limited to the first 1,000 participants who sign up through the ORAU Portal: https://oraulearning.org/?partition=ncbi. Since enrollment is on a first-come, first-served basis, please only sign up for this educational opportunity if you will be able to participate fully.

Learners will watch 6-7 videos (average video duration: 45-60 minutes) online during the first 7 days of the course. These videos will cover the basics of NGS data, preprocessing, quality control and alignment strategies for both DNA-Seq and RNA-Seq, as well as a brief discussion of downstream analysis. Additionally, we will demonstrate how to leverage BLAST tools for NGS analysis.

Next, participants will apply a selection of RNA-Seq alignment algorithms over three days (1-2 hours per day), mapping RNA-Seq data to GRCh38 chromosome 20. Finally, participants will compare the results of these mappers for specific genes.

Throughout the course, participants will be able to post questions at Biostars; experts from NCBI and elsewhere will be available online to answer questions. Learners will emerge from the course equipped to map their own RNA-Seq or DNA-Seq data to the human genome, understand the options for downstream analysis, and use their understanding of the basic steps of data processing to interact more effectively with bioinformatician collaborators.